Class NavmeshCut Extends NavmeshClipper
Navmesh cutting is used for fast recast/navmesh graph updates.
Navmesh cutting is used to cut holes into an existing navmesh generated by a recast or navmesh graph. Recast/navmesh graphs usually only allow either just changing parameters on existing nodes (e.g make a whole triangle unwalkable) which is not very flexible or recalculate a whole tile which is pretty slow. With navmesh cutting you can remove (cut) parts of the navmesh that is blocked by obstacles such as a new building in an RTS game however you cannot add anything new to the navmesh or change the positions of the nodes. This is significantly faster than recalculating whole tiles from scratch in a recast graph.
The NavmeshCut component uses a 2D shape to cut the navmesh with. A rectangle and a circle shape is built in, but you can also specify a custom mesh to use. 
Note that the shape is not 3D so if you rotate the cut you will see that the 2D shape will be rotated and then just projected down on the XZ plane.
In the scene view the NavmeshCut looks like an extruded 2D shape because a navmesh cut also has a height. It will only cut the part of the navmesh which it touches. For performance reasons it only checks the bounding boxes of the triangles in the navmesh, so it may cut triangles whoose bounding boxes it intersects even if the triangle does not intersect the extruded shape. However in most cases this does not make a large difference.
It is also possible to set the navmesh cut to dual mode by setting the isDual field to true. This will prevent it from cutting a hole in the navmesh and it will instead just split the navmesh along the border but keep both the interior and the exterior. This can be useful if you for example want to change the penalty of some region which does not neatly line up with the navmesh triangles. It is often combined with the GraphUpdateScene component (however note that the GraphUpdateScene component will not automatically reapply the penalty if the graph is updated again).
By default the navmesh cut does not take rotation or scaling into account. If you want to do that, you can set the useRotationAndScale field to true. This is a bit slower, but it is not a very large difference.
Version
In 3.x navmesh cutting could only be used with recast graphs, but in 4.x they can be used with both recast and navmesh graphs.
Custom meshes
For most purposes you can use the built-in shapes, however in some cases a custom cutting mesh may be useful. The custom mesh should be a flat 2D shape like in the image below. The script will then find the contour of that mesh and use that shape as the cut. Make sure that all normals are smooth and that the mesh contains no UV information. Otherwise Unity might split a vertex and then the script will not find the correct contour. You should not use a very high polygon mesh since that will create a lot of nodes in the navmesh graph and slow down pathfinding because of that. For very high polygon meshes it might even cause more suboptimal paths to be generated if it causes many thin triangles to be added to the navmesh. 
Control updates through code
Navmesh cuts are applied periodically, but sometimes you may want to ensure the graph is up to date right now. Then you can use the following code. // Schedule pending updates to be done as soon as the pathfinding threads You can also control how often the scripts check for if any navmesh cut has changed. If you have a very large number of cuts it may be good for performance to not check it as often.
// are done with what they are currently doing.
AstarPath.active.navmeshUpdates.ForceUpdate();
// Block until the updates have finished
AstarPath.active.FlushGraphUpdates();// Check every frame (the default) You can also find this setting in the AstarPath inspector under Settings.
AstarPath.active.navmeshUpdates.updateInterval = 0;
// Check every 0.1 seconds
AstarPath.active.navmeshUpdates.updateInterval = 0.1f;
// Never check for changes
AstarPath.active.navmeshUpdates.updateInterval = -1;
// You will have to schedule updates manually using
AstarPath.active.navmeshUpdates.ForceUpdate();
Navmesh cutting and tags/penalties
Because navmesh cutting can modify the triangles in the navmesh pretty much abitrarily it is not possible to keep tags and penalties when updating the graph. The tags and penalties will be preserved for nodes which stay exactly the same when an update is applied though.
If you need to use tags, the only stable way to keep them is to apply all the graph updates that set them every time a navmesh cut update has been done. This is of course relatively slow, but it will at least work.
A* Pro Feature:
This is an A* Pathfinding Project Pro feature only. This function/class/variable might not exist in the Free version of the A* Pathfinding Project or the functionality might be limited.
The Pro version can be bought here
Public Methods
Forces this navmesh cut to update the navmesh.
World space contour of the navmesh cut.
Returns true if this object has moved so much that it requires an update.
Called whenever this navmesh cut is used to update the navmesh.
Public Variables
Radius of the circle.
Number of vertices on the circle.
The cut will be extruded to this height.
Only makes a split in the navmesh, but does not remove the geometry to make a hole.
Custom mesh to use.
Scale of the custom mesh, if used.
Size of the rectangle.
Shape of the cut.
Distance between positions to require an update of the navmesh.
How many degrees rotation that is required for an update to the navmesh.
Includes rotation and scale in calculations.
Public Static Variables
Public Enums
Inherited Public Members
All navmesh clipper components in the scene.
Private/Protected Members
Cached variable, to avoid allocations.
Bounds in XZ space after transforming using the *inverse* transform of the inverseTransform parameter.
Y coordinate of the center of the bounding box in graph space.
Internal method to notify the NavmeshCut that it has just been used to update the navmesh.
Handle serialization backwards compatibility.
Cached variable, to avoid allocations.
Handle serialization backwards compatibility.
cached transform component